Detailed information of SNP:
|
SNP ID:
sf0715975787(Gbrowse)
Chromosome: chr07 Position: 15975787 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 63.36% | 36.64% |
| All Indica | 794 | 95.09% | 4.91% |
| All Japonica | 496 | 11.69% | 88.31% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 334 | 16.77% | 83.23% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715975787 | T->C | LOC_Os07g27420(LOC_Os07g27420.1) | Non-Synonymous SNP |