Detailed information of SNP:
|
SNP ID:
sf0715977141(Gbrowse)
Chromosome: chr07 Position: 15977141 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 59.72% | 40.28% |
| All Indica | 735 | 91.29% | 8.71% |
| All Japonica | 496 | 11.29% | 88.71% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 343 | 93.00% | 7.00% |
| Indica II | 190 | 94.21% | 5.79% |
| Indica Intermediate | 202 | 85.64% | 14.36% |
| Temperate Japonica | 334 | 16.17% | 83.83% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715977141 | A->G | LOC_Os07g27420(LOC_Os07g27420.1) | Non-Synonymous SNP |