Detailed information of SNP:
|
SNP ID:
sf0715982736(Gbrowse)
Chromosome: chr07 Position: 15982736 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 73.33% | 26.67% |
| All Indica | 790 | 53.92% | 46.08% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 56.03% | 43.97% |
| Indica II | 209 | 33.97% | 66.03% |
| Indica Intermediate | 208 | 70.19% | 29.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715982736 | T->G | LOC_Os07g27430(LOC_Os07g27430.1) | INTRON |