Detailed information of SNP:
|
SNP ID:
sf0715985287(Gbrowse)
Chromosome: chr07 Position: 15985287 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.44% | 45.56% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0715985287 | C->T | LOC_Os07g27440(LOC_Os07g27440.1) | UTR_5_PRIME |