Detailed information of SNP:
|
SNP ID:
sf0716013767(Gbrowse)
Chromosome: chr07 Position: 16013767 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.34% | 40.66% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716013767 | G->C | LOC_Os07g27480(LOC_Os07g27480.1) | INTRON |