Detailed information of SNP:
|
SNP ID:
sf0716063216(Gbrowse)
Chromosome: chr07 Position: 16063216 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 92.23% | 7.77% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 482 | 80.29% | 19.71% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 90.27% | 9.73% |
| Tropical Japonica | 86 | 39.53% | 60.47% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716063216 | C->T | INTERGENIC | None |