Detailed information of SNP:
|
SNP ID:
sf0716067656(Gbrowse)
Chromosome: chr07 Position: 16067656 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 62.04% | 37.96% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 495 | 3.43% | 96.57% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 333 | 4.50% | 95.50% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716067656 | T->G | INTERGENIC | None |