Detailed information of SNP:
|
SNP ID:
sf0716082391(Gbrowse)
Chromosome: chr07 Position: 16082391 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 93.04% | 6.96% |
| All Indica | 790 | 88.35% | 11.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 90.30% | 9.70% |
| Indica II | 208 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716082391 | C->A | LOC_Os07g27520(LOC_Os07g27520.1) | Non-Synonymous SNP |