Detailed information of SNP:
|
SNP ID:
sf0716084284(Gbrowse)
Chromosome: chr07 Position: 16084284 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 62.29% | 37.71% |
| All Indica | 732 | 90.44% | 9.56% |
| All Japonica | 495 | 22.83% | 77.17% |
| Aus | 60 | 70.00% | 30.00% |
| Indica I | 351 | 93.73% | 6.27% |
| Indica II | 183 | 79.23% | 20.77% |
| Indica Intermediate | 198 | 94.95% | 5.05% |
| Temperate Japonica | 334 | 32.34% | 67.66% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716084284 | A->G | LOC_Os07g27520(LOC_Os07g27520.1) | Synonymous |