Detailed information of SNP:
|
SNP ID:
sf0716084430(Gbrowse)
Chromosome: chr07 Position: 16084430 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.98% | 9.02% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716084430 | C->T | LOC_Os07g27520(LOC_Os07g27520.1) | Non-Synonymous SNP |