Detailed information of SNP:
|
SNP ID:
sf0716085578(Gbrowse)
Chromosome: chr07 Position: 16085578 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 81.46% | 18.54% |
| All Indica | 779 | 68.04% | 31.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 363 | 55.92% | 44.08% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 206 | 68.45% | 31.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716085578 | T->C | LOC_Os07g27520(LOC_Os07g27520.1) | Non-Synonymous SNP |