Detailed information of SNP:
|
SNP ID:
sf0716088956(Gbrowse)
Chromosome: chr07 Position: 16088956 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.54% | 9.46% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716088956 | G->A | INTERGENIC | None |