Detailed information of SNP:
|
SNP ID:
sf0716090822(Gbrowse)
Chromosome: chr07 Position: 16090822 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 89.16% | 10.84% |
| All Indica | 782 | 94.12% | 5.88% |
| All Japonica | 493 | 79.72% | 20.28% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 195 | 83.59% | 16.41% |
| Temperate Japonica | 331 | 70.09% | 29.91% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716090822 | T->C | INTERGENIC | None |