Detailed information of SNP:
|
SNP ID:
sf0716095223(Gbrowse)
Chromosome: chr07 Position: 16095223 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 79.36% | 20.64% |
| All Indica | 795 | 94.21% | 5.79% |
| All Japonica | 497 | 53.52% | 46.48% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716095223 | T->C | INTERGENIC | None |