Detailed information of SNP:
|
SNP ID:
sf0716099098(Gbrowse)
Chromosome: chr07 Position: 16099098 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 90.32% | 9.68% |
| All Indica | 739 | 84.30% | 15.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 352 | 85.23% | 14.77% |
| Indica II | 196 | 84.69% | 15.31% |
| Indica Intermediate | 191 | 82.20% | 17.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716099098 | C->T | LOC_Os07g27550(LOC_Os07g27550.1) | Synonymous |