Detailed information of SNP:
|
SNP ID:
sf0716099577(Gbrowse)
Chromosome: chr07 Position: 16099577 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1278 | 75.35% | 24.65% |
| All Indica | 669 | 72.20% | 27.80% |
| All Japonica | 492 | 79.27% | 20.73% |
| Aus | 62 | 66.13% | 33.87% |
| Indica I | 321 | 79.44% | 20.56% |
| Indica II | 170 | 63.53% | 36.47% |
| Indica Intermediate | 178 | 67.42% | 32.58% |
| Temperate Japonica | 330 | 70.00% | 30.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716099577 | T->C | INTERGENIC | None |