Detailed information of SNP:
|
SNP ID:
sf0716103341(Gbrowse)
Chromosome: chr07 Position: 16103341 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 56.50% | 43.50% |
| All Indica | 754 | 81.17% | 18.83% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 348 | 81.03% | 18.97% |
| Indica II | 202 | 79.70% | 20.30% |
| Indica Intermediate | 204 | 82.84% | 17.16% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716103341 | C->T | INTERGENIC | None |