Detailed information of SNP:
|
SNP ID:
sf0716109441(Gbrowse)
Chromosome: chr07 Position: 16109441 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.39% | 46.61% |
| All Indica | 799 | 27.16% | 72.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 2.40% | 97.60% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716109441 | A->G | INTERGENIC | None |