Detailed information of SNP:
|
SNP ID:
sf0716122720(Gbrowse)
Chromosome: chr07 Position: 16122720 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 86.76% | 13.24% |
| All Indica | 755 | 76.95% | 23.05% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 66.48% | 33.52% |
| Indica II | 205 | 87.80% | 12.20% |
| Indica Intermediate | 201 | 84.08% | 15.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716122720 | A->G | INTERGENIC | None |