Detailed information of SNP:
|
SNP ID:
sf0716175815(Gbrowse)
Chromosome: chr07 Position: 16175815 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 60.21% | 39.79% |
| All Indica | 789 | 94.68% | 5.32% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 368 | 96.47% | 3.53% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716175815 | T->C | LOC_Os07g27730(LOC_Os07g27730.1) | INTRON |