Detailed information of SNP:
|
SNP ID:
sf0716179380(Gbrowse)
Chromosome: chr07 Position: 16179380 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 93.78% | 6.22% |
| All Indica | 782 | 90.92% | 9.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 369 | 90.51% | 9.49% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 204 | 89.22% | 10.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716179380 | C->T | LOC_Os07g27740(LOC_Os07g27740.1) | INTRON |