Detailed information of SNP:
|
SNP ID:
sf0716240227(Gbrowse)
Chromosome: chr07 Position: 16240227 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 70.12% | 29.88% |
| All Indica | 718 | 56.41% | 43.59% |
| All Japonica | 495 | 95.35% | 4.65% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 358 | 52.79% | 47.21% |
| Indica II | 160 | 73.12% | 26.88% |
| Indica Intermediate | 200 | 49.50% | 50.50% |
| Temperate Japonica | 333 | 93.39% | 6.61% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716240227 | A->G | LOC_Os07g27834(LOC_Os07g27834.1) | Synonymous |