Detailed information of SNP:
|
SNP ID:
sf0716241055(Gbrowse)
Chromosome: chr07 Position: 16241055 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 63.50% | 36.50% |
| All Indica | 764 | 84.16% | 15.84% |
| All Japonica | 486 | 30.04% | 69.96% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 355 | 84.51% | 15.49% |
| Indica II | 204 | 86.76% | 13.24% |
| Indica Intermediate | 205 | 80.98% | 19.02% |
| Temperate Japonica | 330 | 20.61% | 79.39% |
| Tropical Japonica | 89 | 73.03% | 26.97% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716241055 | T->C | LOC_Os07g27834(LOC_Os07g27834.1) | INTRON |