Detailed information of SNP:
SNP ID:
sf0716241055(Gbrowse)
Chromosome: chr07 Position: 16241055 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1370 | 63.50% | 36.50% |
All Indica | 764 | 84.16% | 15.84% |
All Japonica | 486 | 30.04% | 69.96% |
Aus | 67 | 86.57% | 13.43% |
Indica I | 355 | 84.51% | 15.49% |
Indica II | 204 | 86.76% | 13.24% |
Indica Intermediate | 205 | 80.98% | 19.02% |
Temperate Japonica | 330 | 20.61% | 79.39% |
Tropical Japonica | 89 | 73.03% | 26.97% |
Japonica Intermediate | 67 | 19.40% | 80.60% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0716241055 | T->C | LOC_Os07g27834(LOC_Os07g27834.1) | INTRON |