Detailed information of SNP:



SNP ID: sf0716241055(Gbrowse)

Chromosome: chr07

Position: 16241055
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1370 63.50% 36.50%
All Indica764 84.16% 15.84%
All Japonica486 30.04% 69.96%
Aus67 86.57% 13.43%
Indica I355 84.51% 15.49%
Indica II204 86.76% 13.24%
Indica Intermediate205 80.98% 19.02%
Temperate Japonica330 20.61% 79.39%
Tropical Japonica89 73.03% 26.97%
Japonica Intermediate67 19.40% 80.60%
Group VI/Aromatic14 0.00% 100.00%
Intermediate39 58.97% 41.03%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0716241055 T->C LOC_Os07g27834(LOC_Os07g27834.1) INTRON