Detailed information of SNP:
|
SNP ID:
sf0716241654(Gbrowse)
Chromosome: chr07 Position: 16241654 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 54.14% | 45.86% |
| All Indica | 783 | 84.55% | 15.45% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 366 | 84.43% | 15.57% |
| Indica II | 208 | 88.46% | 11.54% |
| Indica Intermediate | 209 | 80.86% | 19.14% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716241654 | A->G | LOC_Os07g27834(LOC_Os07g27834.1) | INTRON |