Detailed information of SNP:
|
SNP ID:
sf0716251065(Gbrowse)
Chromosome: chr07 Position: 16251065 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 54.37% | 45.63% |
| All Indica | 787 | 93.27% | 6.73% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 370 | 98.11% | 1.89% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716251065 | T->C | INTERGENIC | None |