Detailed information of SNP:
|
SNP ID:
sf0716268586(Gbrowse)
Chromosome: chr07 Position: 16268586 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1171 | 53.46% | 46.54% |
| All Indica | 558 | 93.19% | 6.81% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 217 | 98.62% | 1.38% |
| Indica II | 198 | 93.43% | 6.57% |
| Indica Intermediate | 143 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716268586 | A->G | INTERGENIC | None |