Detailed information of SNP:
|
SNP ID:
sf0716283420(Gbrowse)
Chromosome: chr07 Position: 16283420 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 55.55% | 44.45% |
| All Indica | 794 | 88.16% | 11.84% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 60 | 86.67% | 13.33% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716283420 | G->A | LOC_Os07g27920(LOC_Os07g27920.1) | Non-Synonymous SNP |