Detailed information of SNP:
|
SNP ID:
sf0716329939(Gbrowse)
Chromosome: chr07 Position: 16329939 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 63.00% | 37.00% |
| All Indica | 799 | 45.93% | 54.07% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 20.19% | 79.81% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716329939 | T->C | INTERGENIC | None |