Detailed information of SNP:
|
SNP ID:
sf0716334296(Gbrowse)
Chromosome: chr07 Position: 16334296 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 59.26% | 40.74% |
| All Indica | 742 | 94.47% | 5.53% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 339 | 96.46% | 3.54% |
| Indica II | 200 | 97.00% | 3.00% |
| Indica Intermediate | 203 | 88.67% | 11.33% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716334296 | T->C | LOC_Os07g28000(LOC_Os07g28000.1) | Non-Synonymous SNP |