Detailed information of SNP:
|
SNP ID:
sf0716334940(Gbrowse)
Chromosome: chr07 Position: 16334940 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 76.22% | 23.78% |
| All Indica | 793 | 74.91% | 25.09% |
| All Japonica | 497 | 76.46% | 23.54% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 371 | 75.47% | 24.53% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716334940 | A->G | LOC_Os07g28000(LOC_Os07g28000.1) | Synonymous |