Detailed information of SNP:
|
SNP ID:
sf0716355800(Gbrowse)
Chromosome: chr07 Position: 16355800 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 88.96% | 11.04% |
| All Indica | 758 | 80.47% | 19.53% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 89.34% | 10.66% |
| Indica II | 187 | 52.94% | 47.06% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716355800 | C->T | LOC_Os07g28050(LOC_Os07g28050.1) | Non-Synonymous SNP |