Detailed information of SNP:
|
SNP ID:
sf0716364842(Gbrowse)
Chromosome: chr07 Position: 16364842 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 66.62% | 33.38% |
| All Indica | 796 | 48.62% | 51.38% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 373 | 62.47% | 37.53% |
| Indica II | 212 | 20.75% | 79.25% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716364842 | G->A | INTERGENIC | None |