Detailed information of SNP:
|
SNP ID:
sf0716371546(Gbrowse)
Chromosome: chr07 Position: 16371546 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 97.60% | 2.40% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716371546 | G->A | LOC_Os07g28070(LOC_Os07g28070.1) | Non-Synonymous SNP |