Detailed information of SNP:
|
SNP ID:
sf0716390503(Gbrowse)
Chromosome: chr07 Position: 16390503 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 74.24% | 25.76% |
| All Indica | 797 | 57.34% | 42.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 39.04% | 60.96% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716390503 | C->G | INTERGENIC | None |