Detailed information of SNP:
|
SNP ID:
sf0716391406(Gbrowse)
Chromosome: chr07 Position: 16391406 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 95.67% | 4.33% |
| All Indica | 683 | 99.71% | 0.29% |
| All Japonica | 492 | 90.65% | 9.35% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 306 | 100.00% | 0.00% |
| Indica II | 186 | 99.46% | 0.54% |
| Indica Intermediate | 191 | 99.48% | 0.52% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716391406 | G->T | INTERGENIC | None |