Detailed information of SNP:
|
SNP ID:
sf0716415865(Gbrowse)
Chromosome: chr07 Position: 16415865 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 58.70% | 41.30% |
| All Indica | 795 | 94.21% | 5.79% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716415865 | A->G | INTERGENIC | None |