Detailed information of SNP:
|
SNP ID:
sf0716417461(Gbrowse)
Chromosome: chr07 Position: 16417461 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.96% | 40.04% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716417461 | T->C | INTERGENIC | None |