Detailed information of SNP:
|
SNP ID:
sf0716433427(Gbrowse)
Chromosome: chr07 Position: 16433427 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.17% | 39.83% |
| All Indica | 795 | 96.10% | 3.90% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 87.50% | 12.50% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716433427 | T->C | INTERGENIC | None |