Detailed information of SNP:
|
SNP ID:
sf0716447927(Gbrowse)
Chromosome: chr07 Position: 16447927 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.92% | 43.08% |
| All Indica | 796 | 33.79% | 66.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 13.10% | 86.90% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 210 | 33.81% | 66.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716447927 | A->G | LOC_Os07g28170(LOC_Os07g28170.1) | INTRON |