Detailed information of SNP:
|
SNP ID:
sf0716506620(Gbrowse)
Chromosome: chr07 Position: 16506620 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 63.52% | 36.48% |
| All Indica | 795 | 77.11% | 22.89% |
| All Japonica | 421 | 35.87% | 64.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 275 | 32.00% | 68.00% |
| Tropical Japonica | 84 | 57.14% | 42.86% |
| Japonica Intermediate | 62 | 24.19% | 75.81% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716506620 | T->G | INTERGENIC | None |