Detailed information of SNP:
|
SNP ID:
sf0716537049(Gbrowse)
Chromosome: chr07 Position: 16537049 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.30% | 42.70% |
| All Indica | 798 | 76.94% | 23.06% |
| All Japonica | 496 | 23.19% | 76.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 63.10% | 36.90% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 334 | 21.26% | 78.74% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716537049 | A->G | INTERGENIC | None |