Detailed information of SNP:
|
SNP ID:
sf0716553296(Gbrowse)
Chromosome: chr07 Position: 16553296 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 63.61% | 36.39% |
| All Indica | 785 | 52.23% | 47.77% |
| All Japonica | 496 | 84.68% | 15.32% |
| Aus | 59 | 22.03% | 77.97% |
| Indica I | 373 | 75.34% | 24.66% |
| Indica II | 210 | 14.29% | 85.71% |
| Indica Intermediate | 202 | 49.01% | 50.99% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716553296 | G->C | LOC_Os07g28360(LOC_Os07g28360.1) | INTRON |