Detailed information of SNP:
|
SNP ID:
sf0716572691(Gbrowse)
Chromosome: chr07 Position: 16572691 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 87.97% | 12.03% |
| All Indica | 785 | 78.85% | 21.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 68.77% | 31.23% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 208 | 79.33% | 20.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716572691 | C->T | LOC_Os07g28370(LOC_Os07g28370.1) | Non-Synonymous SNP |