Detailed information of SNP:



SNP ID: sf0716572691(Gbrowse)

Chromosome: chr07

Position: 16572691
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1405 87.97% 12.03%
All Indica785 78.85% 21.15%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I365 68.77% 31.23%
Indica II212 95.75% 4.25%
Indica Intermediate208 79.33% 20.67%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0716572691 C->T LOC_Os07g28370(LOC_Os07g28370.1) Non-Synonymous SNP