Detailed information of SNP:
|
SNP ID:
sf0716737068(Gbrowse)
Chromosome: chr07 Position: 16737068 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1251 | 95.04% | 4.96% |
| All Indica | 754 | 99.87% | 0.13% |
| All Japonica | 382 | 85.86% | 14.14% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 357 | 100.00% | 0.00% |
| Indica II | 188 | 99.47% | 0.53% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 248 | 93.55% | 6.45% |
| Tropical Japonica | 85 | 70.59% | 29.41% |
| Japonica Intermediate | 49 | 73.47% | 26.53% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716737068 | G->A | LOC_Os07g28600(LOC_Os07g28600.1) | Non-Synonymous SNP |