Detailed information of SNP:
|
SNP ID:
sf0716747291(Gbrowse)
Chromosome: chr07 Position: 16747291 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 94.88% | 5.12% |
| All Indica | 770 | 91.69% | 8.31% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 187 | 71.12% | 28.88% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716747291 | A->T | INTERGENIC | None |