Detailed information of SNP:
|
SNP ID:
sf0716784766(Gbrowse)
Chromosome: chr07 Position: 16784766 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 96.63% | 3.37% |
| All Indica | 786 | 99.36% | 0.64% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 56 | 92.86% | 7.14% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 201 | 98.51% | 1.49% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716784766 | A->G | INTERGENIC | None |