Detailed information of SNP:
|
SNP ID:
sf0716820126(Gbrowse)
Chromosome: chr07 Position: 16820126 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 91.24% | 8.76% |
| All Indica | 747 | 86.75% | 13.25% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 361 | 88.09% | 11.91% |
| Indica II | 182 | 86.26% | 13.74% |
| Indica Intermediate | 204 | 84.80% | 15.20% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716820126 | G->T | LOC_Os07g28740(LOC_Os07g28740.1) | Synonymous |