Detailed information of SNP:
|
SNP ID:
sf0716827381(Gbrowse)
Chromosome: chr07 Position: 16827381 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 95.66% | 4.34% |
| All Indica | 787 | 92.38% | 7.62% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 206 | 84.95% | 15.05% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716827381 | C->A | LOC_Os07g28750(LOC_Os07g28750.1) | INTRON |