Detailed information of SNP:
|
SNP ID:
sf0716827457(Gbrowse)
Chromosome: chr07 Position: 16827457 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 95.87% | 4.13% |
| All Indica | 789 | 94.17% | 5.83% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 206 | 90.78% | 9.22% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716827457 | G->A | LOC_Os07g28750(LOC_Os07g28750.1) | INTRON |