Detailed information of SNP:
|
SNP ID:
sf0716927364(Gbrowse)
Chromosome: chr07 Position: 16927364 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.71% | 42.29% |
| All Indica | 796 | 91.71% | 8.29% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716927364 | G->A | INTERGENIC | None |